Quality Control DictionaryΒΆ
The quality control measures (prefix_quality.csv)
- Coregsitration of Functional and T1w::
- coregCrossCorr - cross correlation
- CoregJaccard - Jaccard index
- CoregDice - Dice index
- CoregCoverage - Coverage index
- Registration of T1w to Template:
- regCrossCorr - cross correlation
- regJaccard - Jaccard index
- regDice - Dice index
- regCoverage - Coverage index
- Normalization of T1w/Functional to Template:
- normCrossCorr - cross correlation
- normJaccard - Jaccard index
- normDice - Dice index
- normCoverage - Coverage index
- QC for anatomical:
- euler_number_rh,euler_number_lh - Eurler number if freesurfer is included
- meanGMD - mean of Grey matter density
- SignalToNoiseRatio - grey matter signal to noise ratio
- BackgroundKurtosis - background intensity Kurtosis
- GreyMatterKurtosis - grey matter intensity Kurtosis
- EntropyFocusCriterion - entropy focus criterion ( for ghost signals)
- CorticalContrasts - coritical contrasts between white matter and grey matter signals
- FGBGEnergyRatio - Foreground-to-background energy ratio
- ContrastToNoiseRatio - contrast to noise ratio
- WhiteMatterSkewness - WhiteMatter Skewness
- BackgroundSkewness - background intensity Kurtosis
- Motion/spikes summary.::
- relMeansRMSMotion - mean value of RMS motion
- relMaxRMSMotion - maximum vaue of RMS motion
- nSpikesFD - number of spikes per FD
- nspikesDV - number of spikes per DV
- pctSpikesDV - percentage of spikes per DV
- pctSpikesFD - percentage of spikes per FD
- meanDV - mean DVARS
- regression summary.::
- motionDVCorrInit - correlation of RMS and DVARS before regresion
- motionDVCorrFinal - correlation of RMS and DVARS after regresion
- nNuisanceParameters - total number of nuisance Parameters in addition to custom regressors
- nVolCensored - total number of volume(s) censored
- estimatedLostTemporalDOF - total degree of freedom lost
- CBF quality evaluation index.::
- cbf_qei - cbf quality evalution index
- negativeVoxelsTS - total number of negative voxels in CBF timeseries
- negativeVoxels - total number of negative voxels in mean CBF
- cbfscore_qei - cbf score quality evaluation index
- cbfscrub_qei - cbf scrub quality evaluation index
- cbfbasil_qei - cbf basil quality evaluation index
- cbfspatial_qei - cbf basil spatial quality evaluation index
- cbfpv_qei - cbf with partial volume correction quality evaluation index
- nvoldel - number of volume deleted due to score
- negativeVoxels_basil - number of negative voxels of mean cbf basil
- cbftsnr - cbf temporal signal to noise ratio
- cbfscoretsnr - cbf score temporal signal to noise ratio