prestats
ΒΆ
prestats
was previously an omnibus module for the preprocessing of functional MR images. The
functionality of prestats
is mostly covered by FMRIPREP
.
prestats
requries a line in the design file that indicates the input image is from
FMRIPREP
ouput:
# input bold signal is from FMRIPREP output
prestats_process[cxt]=FMP
- The
prestats
outputs are derived directly from theFMRIPREP
. The expected outputs include:: prefix_preprocessed.nii.gz
: Bold signalprefix_referenceVolume.nii.gz
: reference volume with skullprefix_referenceVolumeBrain.nii.gz
: reference volume without skullprefix_segmenation.nii.gz
: segmentation tissuesprefix_struct.nii.gz
: T1w imageprefix_mask.nii.gz
: brain maskprefix_fmriconf.tsv
: confound regressors from ``FMRIPREP`
All *nii.gz
are expected to be have the same voxel size as the input but may have their
orientation changed to the FSL standard.
- The
prestats
outputs also consist of Quality Assesmment between structrual and BOLD images:: prefix_coregCoverage.txt
: Coverage indexprefix_coregCrossCorr.txt
: Cross correlationprefix_coregDice.txt
: Dice indexprefix_coregJaccard.txt
: Jaccard index